Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM40_4587Helix-turn-helix domain, rpiR family protein. (295 aa)    
Predicted Functional Partners:
ddpX
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
 
     0.764
DM40_4877
SIS domain protein.
  
     0.683
DM40_4589
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
     0.614
iaaA
Isoaspartyl peptidase.
  
    0.583
DM40_4590
Binding--dependent transport system inner membrane component family protein.
      0.538
DM40_4806
Transglycosylase SLT domain protein.
  
     0.497
DM40_5671
Cytochrome c family protein.
  
     0.477
DM40_4857
Hypothetical protein.
  
     0.451
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
  
  
 0.447
DM40_2348
Xylose isomerase-like TIM barrel family protein.
  
     0.444
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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