STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4587Helix-turn-helix domain, rpiR family protein. (295 aa)    
Predicted Functional Partners:
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
  
 
 0.809
ddpX
D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
 
     0.765
DM40_4877
SIS domain protein.
  
     0.683
DM40_4589
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
     0.614
DM40_1329
Aldose 1-epimerase family protein.
  
  
  0.577
DM40_4590
Binding--dependent transport system inner membrane component family protein.
      0.539
oxdD
Oxalate decarboxylase oxdD.
    
  0.528
iaaA
Isoaspartyl peptidase.
  
    0.519
DM40_4806
Transglycosylase SLT domain protein.
  
     0.497
DM40_5671
Cytochrome c family protein.
  
     0.477
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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