STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmpITaut: 4-oxalocrotonate tautomerase enzyme family protein. (62 aa)    
Predicted Functional Partners:
dmpI-2
4-oxalocrotonate tautomerase domain protein.
  
  
  0.918
DM40_3864
Tautomerase enzyme family protein.
     
  0.900
DM40_4653
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein.
     
 0.661
DM40_4652
Urea transporter family protein.
       0.610
DM40_5001
ac_ald_DH_ac: acetaldehyde dehydrogenase.
     
 0.456
DM40_4655
Putative cytoplasmic protein.
       0.432
mhpD
2-keto-4-pentenoate hydratase.
     
 0.417
hpaH
hpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
     
 0.414
dmpG
4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase.
     
 0.406
mhpC
2-hydroxy-6-oxononadienedioate/2-hydroxy-6- oxononatrienedioate hydrolase.
     
 0.403
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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