STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmpITaut: 4-oxalocrotonate tautomerase enzyme family protein. (62 aa)    
Predicted Functional Partners:
DM40_3864
Tautomerase enzyme family protein.
     
 0.912
DM40_4653
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein.
     
 0.648
DM40_4652
Urea transporter family protein.
       0.609
dmpI-2
4-oxalocrotonate tautomerase domain protein.
  
  
  0.587
DM40_5268
Fumarylacetoacetate (FAA) hydrolase family protein.
 
  
 0.549
mhpD
2-keto-4-pentenoate hydratase.
    
 0.473
hpaH
hpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
    
 0.450
DM40_4655
Putative cytoplasmic protein.
       0.432
DM40_1444
Aminotransferase class IV family protein.
    
 0.414
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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