STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4680Rieske [2Fe-2S] domain protein. (356 aa)    
Predicted Functional Partners:
DM40_4675
Short chain dehydrogenase family protein.
 
  
  0.935
DM40_4678
Cupin domain protein.
 
    0.935
nadX
Hypothetical protein; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
 
    0.901
DM40_4671
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
  
 0.897
DM40_4674
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
 
     0.888
DM40_4677
Alpha/beta hydrolase fold family protein.
 
 
   0.884
DM40_4679
Short chain dehydrogenase family protein.
 
     0.883
DM40_5605
Ring hydroxylating beta subunit.
 
 
 0.843
DM40_3783
Ring hydroxylating beta subunit.
 
 
 0.809
benB
benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit.
 
 
 0.794
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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