STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4721Patatin-like phospholipase family protein. (379 aa)    
Predicted Functional Partners:
adc
Putative acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
 
   
 0.697
DM40_5151
Phospholipase D family protein.
    
  0.557
DM40_4418
Poly-beta-hydroxybutyrate polymerase family protein.
 
   
 0.520
DM40_4720
Copper binding s, plastocyanin/azurin family protein.
       0.513
DM40_4719
Calcineurin-like phosphoesterase family protein.
    
  0.491
DM40_2857
PHB_DH: 3-hydroxybutyrate dehydrogenase family protein.
 
  
  0.447
DM40_3427
PHB_DH: 3-hydroxybutyrate dehydrogenase family protein.
 
  
  0.445
DM40_3551
Methyltransferase domain protein.
  
  
  0.444
DM40_302
FAD dependent oxidoreductase family protein; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.429
phaZ-3
PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein.
  
     0.425
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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