STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4733Gram-negative porin family protein. (402 aa)    
Predicted Functional Partners:
DM40_731
Thioredoxin family protein.
  
 
   0.745
DM40_1605
Transglycosylase SLT domain protein.
  
     0.736
DM40_2432
Putative membrane protein.
  
     0.701
DM40_3875
Putative membrane protein.
  
     0.671
DM40_1274
Hypothetical protein.
  
     0.669
DM40_46
Gram-negative porin family protein.
  
  
 
0.669
DM40_4557
Gram-negative porin family protein.
  
  
 
0.664
DM40_759
Helix-turn-helix family protein.
  
     0.664
DM40_2395
Hypothetical protein.
  
     0.661
DM40_2907
Putative lipoprotein transmembrane.
  
     0.660
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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