STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4767Chitinase class I family protein. (847 aa)    
Predicted Functional Partners:
DM40_2558
25-like lysozyme family protein.
  
    0.784
DM40_4766
Hypothetical protein.
       0.773
DM40_2557
Baseplate J-like family protein.
  
  
 0.771
DM40_4768
vgr_GE: Rhs element Vgr family protein.
 
   
 0.750
DM40_4761
Hypothetical protein.
 
     0.707
DM40_4763
Intracellular multiplication and macrophage-killing family protein.
     
 0.688
DM40_4762
impA-related N-terminal family protein.
     
 0.686
DM40_4765
PAAR motif family protein.
       0.669
DM40_4760
Hypothetical protein.
       0.664
DM40_4764
Hypothetical protein.
       0.664
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.