STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_477625-like lysozyme family protein. (143 aa)    
Predicted Functional Partners:
DM40_4772
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
  
 0.933
DM40_4774
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
  
 0.914
clpV-2
VI_ClpV1: type VI secretion ATPase, ClpV1 family.
 
  
 0.895
DM40_4761
Hypothetical protein.
 
  
 0.870
DM40_4759
Type VI secretion lipofamily protein.
 
  
 0.869
DM40_4771
Hypothetical protein.
 
  
 0.857
DM40_4760
Hypothetical protein.
 
  
 0.853
DM40_4763
Intracellular multiplication and macrophage-killing family protein.
 
  
 0.853
DM40_4762
impA-related N-terminal family protein.
 
  
 0.847
DM40_4773
ompA family protein.
 
   
 0.841
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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