STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_47792OG-Fe(II) oxygenase superfamily protein. (227 aa)    
Predicted Functional Partners:
DM40_4777
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.962
DM40_548
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.948
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
   
 
  0.904
DM40_4778
Sel1 repeat family protein.
 
 
  0.881
DM40_3597
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.867
DM40_3712
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.568
DM40_3101
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.450
DM40_1668
tonB dependent receptor family protein.
  
  
 0.429
DM40_5030
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.418
DM40_2277
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.402
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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