STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epaO-2spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family. (390 aa)    
Predicted Functional Partners:
DM40_5378
cheR methyltransferase, all-alpha domain protein.
  
 0.995
fliM
fliM_switch: flagellar motor switch protein FliM.
  
 0.991
DM40_4047
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
 
 
 0.973
DM40_4812
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
 
 
 0.973
DM40_3402
cheC-like family protein.
  
 0.972
fliG
fliG: flagellar motor switch protein FliG.
  
 0.968
flgJ
flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ.
  
  
 0.958
DM40_670
Flagellar assembly FliH family protein.
  
 
 0.957
flgK
flgK_ends: flagellar hook-associated protein FlgK.
  
 
 0.926
flgC
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
  
 
 0.926
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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