STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4806Transglycosylase SLT domain protein. (263 aa)    
Predicted Functional Partners:
epaO-2
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
 
    0.904
epaP-2
yscR: type III secretion apparatus protein, YscR/HrcR family.
  
  
 0.783
DM40_2024
Alginate export family protein.
  
     0.577
DM40_3122
Phospholipase D family protein.
 
     0.575
DM40_4019
pilus_B_mal_scr: type IVB pilus formation outer membrane protein, R64 PilN family.
 
    0.555
DM40_3726
Adhesin HecA family.
  
     0.547
DM40_4818
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
    0.535
DM40_5841
Alginate export family protein.
  
     0.524
DM40_945
Flagellar hook-associated family protein.
  
  
 0.503
DM40_4587
Helix-turn-helix domain, rpiR family protein.
  
     0.497
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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