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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4812hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family. (209 aa)    
Predicted Functional Partners:
DM40_4814
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
  
 0.991
fliI-3
III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase.
 
 
 0.989
flgJ
flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ.
  
  
 0.978
epaR-2
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
  
 0.975
epaO-2
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
 
 
 0.973
DM40_4808
flhB HrpN YscU SpaS family protein.
 
  
 0.966
DM40_4045
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
  
 0.960
fliI-2
III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase.
 
 
 0.954
DM40_5378
cheR methyltransferase, all-alpha domain protein.
  
 
 0.954
fliI
fliI_clade1: flagellar protein export ATPase FliI.
  
 
 0.937
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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