STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4814III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family. (296 aa)    
Predicted Functional Partners:
epaR-2
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.994
DM40_4812
hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family.
 
  
 0.991
bcscS
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.983
DM40_4037
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.980
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.980
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.977
DM40_4808
flhB HrpN YscU SpaS family protein.
 
  
 0.976
epaP-2
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.973
DM40_4820
hrcV: type III secretion, HrcV family protein.
 
 
 0.967
DM40_4041
hrcV: type III secretion, HrcV family protein.
 
 
 0.959
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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