STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4826Carbohydrate-selective porin, OprB family protein. (491 aa)    
Predicted Functional Partners:
DM40_4825
Hypothetical protein.
       0.563
hpnJ
Radical SAM superfamily protein.
  
     0.546
DM40_4165
hpnL: membrane family protein.
  
     0.520
DM40_3395
Phosphorylase superfamily protein.
  
     0.481
DM40_4339
Cytochrome c family protein.
  
     0.453
DM40_2955
PRC-barrel domain protein.
  
     0.447
DM40_4297
Hypothetical protein.
  
     0.421
DM40_1838
hpnL: membrane family protein.
  
     0.414
DM40_4340
Phosphoesterase family protein.
  
     0.407
DM40_2024
Alginate export family protein.
  
   
 0.406
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.