STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4867Hypothetical protein; Belongs to the LDH2/MDH2 oxidoreductase family. (369 aa)    
Predicted Functional Partners:
DM40_3155
Xylose isomerase-like TIM barrel family protein.
    
 0.791
DM40_2856
Aminotransferase class I and II family protein.
     
 0.778
DM40_4344
Aminotransferase class I and II family protein.
     
 0.778
DM40_4866
tfoX N-terminal domain protein.
       0.776
DM40_492
Aminotransferase class IV family protein.
   
  0.767
tyrB
Aromatic-amino-acid aminotransferase.
     
 0.755
aepY
ppyr-DeCO2ase: phosphonopyruvate decarboxylase.
 
  
 0.733
DM40_2839
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.729
DM40_1030
Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.
    
 0.620
DM40_1335
Malic enzyme, NAD binding domain protein.
    
 0.620
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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