STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
adiABiodegradative arginine decarboxylase. (779 aa)    
Predicted Functional Partners:
aruF
arg_AOST_alph: arginine/ornithine succinyltransferase, alpha subunit.
   
 
  0.911
astA
arg_catab_AstA: arginine N-succinyltransferase.
   
 
  0.911
DM40_68
Hypothetical protein; orn/Lys/Arg decarboxylase, N-terminal domain protein.
  
  
 
0.908
adiC
Arginine/agmatine antiporter.
 
  
 0.856
argH
argH: argininosuccinate lyase.
     
 0.827
DM40_2989
Sigma-54 interaction domain protein.
   
 
 0.648
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
   
 0.624
DM40_1804
Efp_adjacent_2: conserved hypothetical protein, PP_1857 family.
  
     0.598
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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