Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM40_4882Putative membrane protein. (66 aa)    
Predicted Functional Partners:
DM40_1320
Hypothetical protein.
    
 0.814
apaH
apaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
 0.814
DM40_5643
Hypothetical protein.
    
 0.812
DM40_850
SET domain protein.
    
 0.803
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.775
DM40_1718
Histone deacetylase domain protein.
    
 0.768
DM40_1908
Histone deacetylase domain protein.
    
 0.768
DM40_304
MIP: MIP channel s family protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 0.754
aqpZ
MIP channel s family protein; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 0.754
DM40_1689
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
  
 0.753
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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