STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4886Amylo-alpha-1,6-glucosidase family protein. (741 aa)    
Predicted Functional Partners:
DM40_3858
Carbohydrate-binding module 48 family protein; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.874
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.874
treZ
trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase.
  
 
 0.874
pimA_2
Glycosyl transferases group 1 family protein.
 
 
 0.844
DM40_2482
Glycosyl transferases group 1 family protein.
 
 
 0.844
DM40_953
Glycosyl transferases group 1 family protein.
 
 
 0.844
DM40_1157
NIF3 family protein.
    
   0.676
DM40_2980
Glycosyl hydrolases 15 family protein.
 
  
 0.647
xylB
xylB: xylulokinase.
   
   0.624
DM40_236
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein.
   
   0.624
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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