STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4887Autotrans_barl: outer membrane autotransporter barrel domain protein. (1823 aa)    
Predicted Functional Partners:
DM40_1371
Autotrans_barl: outer membrane autotransporter barrel domain protein.
 
  
 0.792
DM40_2277
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.788
DM40_5030
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.782
DM40_4777
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
 
 
 0.777
DM40_4381
VRR-NUC domain protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
  
 
 0.743
DM40_4568
Subtilase family protein.
  
 
 0.743
DM40_3923
tonB-copper: TonB-dependent copper receptor.
    
 
 0.739
DM40_5674
tonB dependent receptor family protein.
    
 
 0.739
DM40_3519
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
  
 0.683
DM40_3724
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
  
 0.683
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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