STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4895HD domain protein. (207 aa)    
Predicted Functional Partners:
DM40_4897
Carbonic anhydrase family protein.
 
     0.799
DM40_4896
Hypothetical protein.
       0.625
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.563
DM40_3691
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
  
     0.563
DM40_4657
Methyltransferase, family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
  
     0.515
DM40_2373
Lipocalin-like domain protein.
  
     0.488
DM40_4894
Helix-turn-helix domain protein.
 
     0.484
DM40_3623
Alpha/beta hydrolase fold family protein.
  
     0.480
DM40_3624
Alpha/beta hydrolase fold family protein.
  
     0.477
DM40_1043
GDSL-like Lipase/Acylhydrolase family protein.
  
     0.461
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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