STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4904anti-sigma-K factor rskA family protein. (244 aa)    
Predicted Functional Partners:
DM40_4903
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 
 0.961
DM40_5362
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 
 0.764
DM40_5422
ahpC/TSA family protein.
     
 0.513
DM40_3763
TIGR02594 family protein.
  
     0.504
DM40_5280
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 
 0.499
DM40_5288
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 
 0.499
DM40_790
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 
 0.497
rpoE
rpoE_Sigma70: RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.441
DM40_4503
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
   
 
 0.441
DM40_63
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
     0.435
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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