STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4916Helix-turn-helix family protein. (185 aa)    
Predicted Functional Partners:
DM40_4253
NAD dependent epimerase/dehydratase family protein.
  
     0.607
DM40_4917
HD domain protein.
       0.567
DM40_3857
Methyltransferase domain protein.
  
     0.565
DM40_4173
Bacterial SH3 domain protein.
  
     0.548
DM40_4915
Putative membrane protein.
 
     0.546
DM40_4601
Hypothetical protein.
  
     0.536
DM40_1371
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
     0.534
DM40_5735
gtrA-like family protein.
  
     0.529
DM40_4887
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
     0.518
DM40_4847
Bifunctional NMN adenylyltransferase/Nudix hydrolase; Belongs to the Nudix hydrolase family.
   
 
  0.507
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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