STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DM40_4921enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family. (263 aa)    
Predicted Functional Partners:
DM40_5297
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
 0.951
DM40_4920
enoyl-CoA hydratase/isomerase family protein.
 
    
0.897
mmsB-2
HIBADH: 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
  
  
 0.831
DM40_4542
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
 0.800
mmsA-4
MMSDH: methylmalonate-semialdehyde dehydrogenase.
  
  0.770
DM40_4925
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
 0.767
DM40_3997
Hpt domain protein.
   
 0.712
DM40_3998
Hpt domain protein.
   
 0.712
DM40_5705
His Kinase A domain protein.
   
 0.703
DM40_5082
His Kinase A domain protein.
   
 0.701
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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