STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
Experiments
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[Homology]
Score
mmsA-4MMSDH: methylmalonate-semialdehyde dehydrogenase. (497 aa)    
Predicted Functional Partners:
mmsB-2
HIBADH: 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
 
 
 0.982
mmsB
HIBADH: 3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
 
 
 0.936
DM40_3289
cit_synth_II: 2-methylcitrate synthase/citrate synthase II family protein; Belongs to the citrate synthase family.
   
 0.930
gabT
GABAtrnsam: 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.925
DM40_2504
acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.921
DM40_336
acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.921
bkdB
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex.
   
 
  0.916
DM40_4322
Aminotransferase class-III family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
  0.914
DM40_3204
oxido_YhdH: quinone oxidoreductase, YhdH/YhfP family protein.
    
  0.909
DM40_4417
Phosphate acetyl/butaryl transferase family protein.
  
 
 0.907
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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