STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4930Metallopeptidase M24 family protein. (299 aa)    
Predicted Functional Partners:
DM40_4931
Short chain dehydrogenase family protein.
 
    0.905
DM40_4932
Putative metal-dependent hydrolase family protein.
 
     0.873
DM40_2827
Fatty acid desaturase family protein.
  
  
  0.758
DM40_4461
BNR repeat-like domain protein.
  
     0.690
DM40_3023
Alpha/beta hydrolase fold family protein.
  
     0.670
DM40_3053
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
  
 0.660
DM40_1371
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
   
 0.581
DM40_739
Hypothetical protein.
  
     0.570
DM40_4796
Putative cheA signal transduction histidine kinase.
  
     0.524
DM40_3694
Hypothetical protein.
  
     0.506
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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