STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_494Prolyl oligopeptidase family protein. (214 aa)    
Predicted Functional Partners:
DM40_495
Thioredoxin-like [2Fe-2S] ferredoxin family protein.
 
     0.848
DM40_1356
Hypothetical protein.
 
     0.564
DM40_496
vanZ like family protein.
 
     0.563
gshA
gshA_ferroox: glutamate--cysteine ligase.
  
     0.539
DM40_497
Hypothetical protein.
       0.502
coq7
Ubiquinone biosynthesis COQ7 family protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
 
     0.491
trpS
tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.471
DM40_493
D-alanyl-D-alanine carboxypeptidase family protein; Belongs to the peptidase S11 family.
 
     0.471
trpS-2
trpS: tryptophan--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.471
DM40_529
Putative protein YchJ.
  
    0.461
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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