STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4947Leucine Rich Repeat family protein. (441 aa)    
Predicted Functional Partners:
DM40_4381
VRR-NUC domain protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
   
 
 0.845
DM40_4568
Subtilase family protein.
   
 
 0.845
DM40_4035
Putative sctD, secretion-associated protein.
   
 
 0.794
DM40_4817
type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family.
   
 
 0.794
DM40_3083
Maj_tail_phi13: phage major tail, phi13 family protein.
  
 
 0.567
DM40_3997
Hpt domain protein.
  
 
 0.546
DM40_3998
Hpt domain protein.
  
 
 0.546
DM40_4906
Rhs_assc_core: RHS repeat-associated core domain protein.
  
 
 0.540
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
    
 
 0.520
DM40_3082
Hypothetical protein.
   
 
 0.511
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.