STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_495Thioredoxin-like [2Fe-2S] ferredoxin family protein. (105 aa)    
Predicted Functional Partners:
nuoE
nuoE_fam: NADH-quinone oxidoreductase, E subunit.
 
 0.984
DM40_1694
Thioredoxin-like [2Fe-2S] ferredoxin family protein.
 
 0.982
DM40_4518
FAD binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.964
DM40_1692
Fdh-alpha: formate dehydrogenase, alpha subunit.
  
 0.948
DM40_3986
formate-DH-alph: formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.948
DM40_5106
Fdh-alpha: formate dehydrogenase, alpha subunit.
  
 0.948
DM40_4180
2Fe-2S iron-sulfur cluster binding domain protein.
  
 0.932
DM40_494
Prolyl oligopeptidase family protein.
 
     0.815
DM40_2711
NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M family protein.
  
  
 0.804
DM40_2887
NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M family protein.
  
  
 0.804
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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