STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgdA2,2-dialkylglycine decarboxylase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (433 aa)    
Predicted Functional Partners:
DM40_1121
Glutamine amidotransferases class-II family protein.
     
 0.876
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.871
DM40_2714
Asp_kin_monofn: aspartate kinase, monofunctional class; Belongs to the aspartokinase family.
    
 0.791
DM40_3297
Acetyltransferase family protein.
 
  
 0.770
DM40_3524
Beta-eliminating lyase family protein.
  
 0.671
uca
Urea_carbox: urea carboxylase.
    
 0.647
DM40_1031
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
 0.631
DM40_540
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
 0.631
DM40_4954
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
 
     0.627
DM40_4535
Acetyltransferase family protein.
  
 
 0.626
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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