STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4978Bacterial regulatory s, gntR family protein. (253 aa)    
Predicted Functional Partners:
DM40_4979
Amidohydrolase family protein.
 
     0.682
DM40_1684
Bacterial regulatory s, gntR family protein.
  
  
 0.676
DM40_5659
Bacterial regulatory s, gntR family protein.
  
  
 0.556
DM40_2620
Bacterial regulatory s, gntR family protein.
  
  
 0.507
hutC-2
His_ut_repres: histidine utilization repressor.
  
    0.492
hutC-3
His_ut_repres: histidine utilization repressor.
  
    0.472
DM40_4980
Periplasmic binding s and sugar binding domain of LacI family protein.
       0.470
hutC
His_ut_repres: histidine utilization repressor.
  
    0.447
DM40_167
UTRA domain protein.
  
    0.441
DM40_427
UTRA domain protein.
  
    0.438
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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