STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4979Amidohydrolase family protein. (296 aa)    
Predicted Functional Partners:
DM40_4983
Short chain dehydrogenase family protein.
 
 
 0.958
DM40_4984
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein.
 
  
 0.952
DM40_5652
Aldo/keto reductase family protein.
  
 0.918
DM40_3340
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
  
  
 0.750
dapA-3
Dihydrodipicolinate synthase.
  
  
 0.750
DM40_4066
Amidohydrolase family protein.
 
  
 
0.694
DM40_4967
Amidohydrolase family protein.
 
  
 
0.694
DM40_4980
Periplasmic binding s and sugar binding domain of LacI family protein.
 
     0.694
DM40_5119
Mandelate racemase/muconate lactonizing enzyme-like protein.
 
  
 0.687
DM40_4978
Bacterial regulatory s, gntR family protein.
 
     0.684
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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