STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4983Short chain dehydrogenase family protein. (258 aa)    
Predicted Functional Partners:
DM40_4979
Amidohydrolase family protein.
 
 
 0.958
DM40_2166
pfkB carbohydrate kinase family protein.
   
  0.806
DM40_573
pfkB carbohydrate kinase family protein; Belongs to the carbohydrate kinase PfkB family.
   
  0.806
DM40_4984
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein.
 
  
 0.765
DM40_4985
Fumarylacetoacetate (FAA) hydrolase family protein.
 
  0.725
DM40_1121
Glutamine amidotransferases class-II family protein.
     
 0.688
DM40_4066
Amidohydrolase family protein.
  
 
  0.652
DM40_4967
Amidohydrolase family protein.
  
 
  0.636
rbsA-4
ABC transporter family protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
       0.619
DM40_126
2Fe-2S iron-sulfur cluster binding domain protein.
  
 0.611
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.