Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM40_4983Short chain dehydrogenase family protein. (258 aa)    
Predicted Functional Partners:
DM40_4979
Amidohydrolase family protein.
 
  
  0.977
DM40_4984
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein.
 
   
 0.744
DM40_4985
Fumarylacetoacetate (FAA) hydrolase family protein.
 
 
   0.693
rbsA-4
ABC transporter family protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
       0.613
DM40_2096
NAD(P)H binding domain of trans-2-enoyl-CoA reductase family protein.
  
     0.583
DM40_3447
Short chain dehydrogenase family protein.
  
     0.555
DM40_4981
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
       0.547
DM40_4986
Short chain dehydrogenase family protein.
 
    
0.523
DM40_2091
Short chain dehydrogenase family protein.
  
     0.500
ph
Cytochrome c domain protein.
  
     0.469
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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