STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4984Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein. (425 aa)    
Predicted Functional Partners:
DM40_4986
Short chain dehydrogenase family protein.
 
  
 0.982
DM40_4979
Amidohydrolase family protein.
 
  
 0.952
DM40_4985
Fumarylacetoacetate (FAA) hydrolase family protein.
 
    0.799
DM40_4983
Short chain dehydrogenase family protein.
 
  
 0.765
DM40_4967
Amidohydrolase family protein.
 
  
 0.645
DM40_4066
Amidohydrolase family protein.
 
  
 0.638
DM40_1322
2-keto-3-deoxy-galactonokinase family protein.
 
 
 0.603
DM40_219
Mannitol dehydrogenase Rossmann domain protein.
    
 0.513
garD
galactar-dH20: galactarate dehydratase.
    
 0.470
rbsA-4
ABC transporter family protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
       0.455
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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