STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4990Gamma-butyrobetaine dioxygenase. (397 aa)    
Predicted Functional Partners:
DM40_2368
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
  0.913
DM40_3118
Aldehyde dehydrogenase family protein.
   
  0.913
DM40_52
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
  0.913
lcdH
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
   
 0.840
DM40_4992
Hypothetical protein.
 
     0.755
DM40_3144
Putative HD phosphohydrolase.
      0.739
DM40_4991
Alpha/beta hydrolase fold family protein.
       0.718
DM40_4994
Hypothetical protein.
 
     0.677
tauB
ABC transporter family protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
  
 
  0.675
tauA
taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein.
  
 
 0.642
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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