STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_4992Hypothetical protein. (162 aa)    
Predicted Functional Partners:
lcdH
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
  
 0.993
DM40_4994
Hypothetical protein.
 
 
 0.947
DM40_1918
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
  
 0.887
DM40_4990
Gamma-butyrobetaine dioxygenase.
 
     0.755
fabD
fabD: malonyl CoA-acyl carrier protein transacylase.
  
 0.692
mdcH
malonate_mdcH: malonate decarboxylase, epsilon subunit.
  
 0.692
DM40_4991
Alpha/beta hydrolase fold family protein.
     
 0.658
DM40_2506
enoyl-CoA hydratase/isomerase family protein.
  
 
 0.635
DM40_337
enoyl-CoA hydratase/isomerase family protein.
  
 
 0.635
DM40_481
enoyl-CoA hydratase/isomerase family protein.
  
 
 0.635
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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