STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mhpB2,3-dihydroxyphenylpropionate/2, 3-dihydroxicinnamic acid 1,2-dioxygenase. (317 aa)    
Predicted Functional Partners:
mhpD
2-keto-4-pentenoate hydratase.
 
  
 0.948
mhpA
3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase.
 
 
 0.947
mhpC
2-hydroxy-6-oxononadienedioate/2-hydroxy-6- oxononatrienedioate hydrolase.
 
 
  0.936
DM40_5001
ac_ald_DH_ac: acetaldehyde dehydrogenase.
 
  
 0.926
dmpG
4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase.
 
  
 0.896
DM40_5005
Bacterial transcriptional regulator family protein.
 
     0.846
hpaH
hpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
 
  
 0.693
DM40_4999
Sugar (and other) transporter family protein.
 
     0.633
DM40_5608
2Fe-2S iron-sulfur cluster binding domain protein.
  
  
 0.624
DM40_4963
Amidohydrolase family protein.
 
  
 0.616
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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