STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5080Short chain dehydrogenase family protein. (334 aa)    
Predicted Functional Partners:
DM40_5213
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.709
DM40_1121
Glutamine amidotransferases class-II family protein.
     
 0.688
DM40_126
2Fe-2S iron-sulfur cluster binding domain protein.
  
 0.611
DM40_5133
2Fe-2S iron-sulfur cluster binding domain protein.
  
 0.611
DM40_5039
Zinc-binding dehydrogenase family protein.
  
 
  0.604
DM40_5700
Eukaryotic DNA topoisomerase I, catalytic core family protein.
  
 
   0.604
ptsP
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
     
 0.580
uca
Urea_carbox: urea carboxylase.
  
 
 0.557
DM40_5081
Hypothetical protein.
       0.533
DM40_1038
2Fe-2S iron-sulfur cluster binding domain protein.
   
 0.532
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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