STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
echA15enoyl-CoA hydratase EchA15; Belongs to the enoyl-CoA hydratase/isomerase family. (275 aa)    
Predicted Functional Partners:
DM40_4122
enoyl-CoA hydratase.
 
   0.792
DM40_5498
maoC like domain protein.
 
  0.734
DM40_3997
Hpt domain protein.
   
 0.712
DM40_3998
Hpt domain protein.
   
 0.712
DM40_5552
Putative acetyl-CoA acetyltransferase-like protein.
 
 0.712
DM40_5705
His Kinase A domain protein.
   
 0.703
DM40_5082
His Kinase A domain protein.
   
 0.701
DM40_5297
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
 
 0.697
DM40_4920
enoyl-CoA hydratase/isomerase family protein.
 
   0.694
DM40_3037
Response regulator.
   
 0.691
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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