Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM40_5119Mandelate racemase/muconate lactonizing enzyme-like protein. (366 aa)    
Predicted Functional Partners:
DM40_5117
Gluconate 2-dehydrogenase subunit 3 family protein.
 
     0.749
DM40_5120
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
 
     0.737
DM40_5118
Putative membrane protein.
 
     0.725
DM40_5116
GMC oxidoreductase family protein.
 
     0.718
DM40_5122
Short chain dehydrogenase family protein.
 
     0.552
DM40_454
Macro domain protein.
   
   0.489
DM40_5115
Hypothetical protein.
       0.452
DM40_1323
Thiamine monophosphate synthase/TENI family protein.
 
   
 0.413
DM40_4979
Amidohydrolase family protein.
 
   
 0.406
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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