STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5122Short chain dehydrogenase family protein. (327 aa)    
Predicted Functional Partners:
DM40_5121
Glycosyl hydrolases 15 family protein.
 
     0.881
DM40_1121
Glutamine amidotransferases class-II family protein.
    
  0.765
DM40_5120
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
  
     0.661
DM40_5117
Gluconate 2-dehydrogenase subunit 3 family protein.
 
     0.644
treY
trehalose_TreY: malto-oligosyltrehalose synthase.
  
     0.577
DM40_5119
Mandelate racemase/muconate lactonizing enzyme-like protein.
 
  
  0.559
treS
treS_nterm: trehalose synthase.
  
  
 0.535
uca
Urea_carbox: urea carboxylase.
     
 0.513
coxB-3
coxB: cytochrome c oxidase, subunit II.
 
     0.504
DM40_5573
Short chain dehydrogenase family protein.
  
 
  0.502
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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