Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM40_5131Endoribonuclease L-PSP family protein. (132 aa)    
Predicted Functional Partners:
DM40_355
Endoribonuclease L-PSP family protein.
  
     0.706
DM40_2804
Endoribonuclease L-PSP family protein.
  
     0.514
benD
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.508
DM40_5133
2Fe-2S iron-sulfur cluster binding domain protein.
       0.504
eutB
ectoine_eutB: ectoine utilization protein EutB.
 
 
 0.486
psdht
Phenylserine dehydratase.
 
 
 0.478
benB
benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit.
       0.431
cbdA
2-halobenzoate 1,2-dioxygenase large subunit.
       0.431
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.418
sds
L-serine dehydratase/L-threonine deaminase.
 
 
 0.415
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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