STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5195X-Pro dipeptidyl-peptidase family protein. (284 aa)    
Predicted Functional Partners:
apaH
apaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.685
DM40_5194
Hypothetical protein.
 
     0.658
DM40_5192
Hypothetical protein.
 
     0.650
DM40_5193
Zinc-binding dehydrogenase family protein.
   
  0.595
cpo-3
Non-heme chloroperoxidase.
  
     0.585
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
  0.536
pheA
CM_P2: chorismate mutase.
     
 0.533
uca
Urea_carbox: urea carboxylase.
  
 
 0.530
cpo-2
Non-heme chloroperoxidase.
 
    
0.520
fixJ_5
Response regulator.
       0.520
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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