Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
fixJ_5Response regulator. (122 aa)    
Predicted Functional Partners:
DM40_5198
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 
 0.714
DM40_5292
GAF domain protein.
 
 
 0.668
DM40_5409
Sensory box protein.
 
 
 0.626
DM40_5378
cheR methyltransferase, all-alpha domain protein.
 
 
 
 0.530
DM40_3037
Response regulator.
 
 
 
 0.524
DM40_3998
Hpt domain protein.
 
 
 
 0.522
DM40_5232
Sensory box protein.
 
 
 
 0.521
DM40_5195
X-Pro dipeptidyl-peptidase family protein.
       0.520
DM40_3499
Sensory box protein.
 
 
 
 0.512
DM40_3997
Hpt domain protein.
 
 
 
 0.512
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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