STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5199Bacterial regulatory s, luxR family protein. (211 aa)    
Predicted Functional Partners:
DM40_5409
Sensory box protein.
 
 
 0.779
DM40_5198
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 
 0.740
DM40_5285
Response regulator.
  
     0.726
DM40_5292
GAF domain protein.
 
 
 0.700
DM40_3996
Bacterial regulatory s, luxR family protein.
  
     0.657
DM40_5378
cheR methyltransferase, all-alpha domain protein.
  
 
 0.629
DM40_4359
Bacterial regulatory s, luxR family protein.
  
     0.623
DM40_4426
Response regulator.
  
 
 
 0.622
DM40_3543
Bacterial regulatory s, luxR family protein.
  
     0.606
DM40_3999
Response regulator.
  
     0.593
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.