STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5213Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (342 aa)    
Predicted Functional Partners:
DM40_1121
Glutamine amidotransferases class-II family protein.
    
  0.765
DM40_5212
Hypothetical protein.
 
     0.734
DM40_5080
Short chain dehydrogenase family protein.
  
 
  0.709
DM40_5214
BON domain protein.
       0.689
DM40_5039
Zinc-binding dehydrogenase family protein.
  
 
  0.614
DM40_5234
Zinc-binding dehydrogenase family protein.
  
 
  0.594
DM40_5210
Short chain dehydrogenase family protein.
 
 
 
0.565
DM40_5573
Short chain dehydrogenase family protein.
  
 
  0.537
DM40_5215
Glycosyl transferases group 1 family protein.
 
    0.523
uca
Urea_carbox: urea carboxylase.
     
 0.513
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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