STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5217glcNAc-PI de-N-acetylase family protein. (236 aa)    
Predicted Functional Partners:
DM40_5215
Glycosyl transferases group 1 family protein.
 
 
 0.825
DM40_5218
Glycosyl transferase 2 family protein.
 
     0.812
cpsB
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.758
DM40_5212
Hypothetical protein.
 
     0.694
DM40_5223
Glycosyl transferase 2 family protein.
 
   
 0.635
DM40_1563
Polysaccharide biosynthesis family protein.
 
     0.634
DM40_4972
Demethylmenaquinone methyltransferase family protein.
    
 0.628
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
    
 0.608
DM40_425
SIS domain protein.
    
 0.607
prpF
prpF: putative AcnD-accessory protein PrpF.
    
 0.603
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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