STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_523Bacterial extracellular solute-binding s, 5 Middle family protein. (531 aa)    
Predicted Functional Partners:
dppC
Binding--dependent transport system inner membrane component family protein.
 
 0.982
DM40_649
Binding--dependent transport system inner membrane component family protein.
 
 0.982
DM40_646
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 0.970
dppD
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 0.963
DM40_650
Bacterial extracellular solute-binding s, 5 Middle family protein.
  
  
 
0.905
DM40_4590
Binding--dependent transport system inner membrane component family protein.
 
 
 0.896
DM40_4591
Binding--dependent transport system inner membrane component family protein.
 
 
 0.889
oppB
Binding--dependent transport system inner membrane component family protein.
 
 
 0.846
DM40_5808
Binding--dependent transport system inner membrane component family protein.
 
 
 0.842
oppC
Oligopeptide transport system permease protein oppC.
 
 
 0.839
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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