STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5230BON domain protein. (322 aa)    
Predicted Functional Partners:
DM40_5228
Hypothetical protein.
       0.610
DM40_5229
ABC transporter family protein.
       0.610
DM40_5179
Hypothetical protein.
  
    0.524
DM40_3258
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein.
  
     0.450
DM40_3600
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
  
    0.442
DM40_3604
csbD-like family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.442
DM40_5180
Hypothetical protein.
  
    0.419
DM40_289
Glutathione-dependent formaldehyde-activating enzyme family protein.
  
    0.418
DM40_5231
Putative chemotaxis protein histidine kinase.
       0.406
DM40_3570
Putative short-chain dehydrogenase/reductase SDR.
  
     0.405
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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