STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5319ABC transporter family protein. (303 aa)    
Predicted Functional Partners:
DM40_5320
Binding--dependent transport system inner membrane component family protein.
 
 
 0.967
DM40_484
Binding--dependent transport system inner membrane component family protein.
 
 
 0.897
DM40_4276
Binding--dependent transport system inner membrane component family protein.
 
 
 0.883
DM40_2193
Binding--dependent transport system inner membrane component family protein.
 
 0.876
DM40_5325
Bacterial extracellular solute-binding s, 3 family protein.
 
 
 0.843
DM40_807
Binding--dependent transport system inner membrane component family protein.
 
 
 0.838
DM40_4525
NMT1-like family protein.
 
 0.829
DM40_5076
Binding--dependent transport system inner membrane component family protein.
 
 
 0.809
uca
Urea_carbox: urea carboxylase.
 
   
 0.749
DM40_4273
ssuA_fam: ABC transporter, substrate-binding, aliphatic sulfonates family protein.
 
 0.713
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.