Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5323Hypothetical protein. (218 aa)    
Predicted Functional Partners:
uca
Urea_carbox: urea carboxylase.
 
   
 0.940
atzF
Allophanate_hyd: allophanate hydrolase.
 
   
 0.916
DM40_5324
Hypothetical protein.
 
    
0.855
DM40_5325
Bacterial extracellular solute-binding s, 3 family protein.
 
     0.768
DM40_5320
Binding--dependent transport system inner membrane component family protein.
 
     0.753
DM40_635
Hypothetical protein.
 
  
 0.735
DM40_5319
ABC transporter family protein.
 
   
 0.588
DM40_634
Allophanate hydrolase subunit 1 family protein.
    
 0.542
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
     
  0.500
lpdA-2
lipoamide_DH: dihydrolipoyl dehydrogenase.
     
  0.500
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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