STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_5329outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein. (488 aa)    
Predicted Functional Partners:
DM40_5327
RND_mfp: efflux transporter, RND family, MFP subunit.
  
   0.842
DM40_5328
acrB/AcrD/AcrF family protein.
  
   0.836
mexA
Multidrug resistance protein mexA.
  
 
 0.708
DM40_2256
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.679
DM40_1860
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.628
DM40_3185
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.612
DM40_239
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
  
 
 0.588
DM40_5101
RND_mfp: efflux transporter, RND family, MFP subunit.
  
   0.582
DM40_2257
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
  
 
 0.566
DM40_3766
RND_mfp: efflux transporter, RND family, MFP subunit.
  
 
 0.562
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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